Transcription Factors Database 
CORG http://corg.molgen.mpg.de/
DBTSS http://dbtss.hgc.jp/index.html
DPinteract (E.coli) http://arep.med.harvard.edu/dpinteract/
GenAtlas  http://www.dsi.univ-paris5.fr/genatlas/
Genomatix Software http://www.genomatix.de/
Match™ http://www.gene-regulation.com/pub/programs.html
ooTFD http://www.ifti.org/ootfd/
oPPOSUM http://www.cisreg.ca/cgi-bin/oPOSSUM/opossum
PRESTA http://baloun.entu.cas.cz/presta/
PRODORIC http://prodoric.tu-bs.de/
Softberry http://www.softberry.com/berry.phtml?topic=index&group=programs&subgroup=promoter
TFSearch  http://www.cbrc.jp/research/db/TFSEARCH.html
TFSS http://www.ifti.org/cgi-bin/ifti/Tfsitescan.pl
TRANSFAC http://www.gene-regulation.com/pub/databases.html
TRED http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=home
TRPD http://wwwmgs.bionet.nsc.ru/mgs/gnw/trrd/
YeaSTRACT http://www.yeastract.com/