Protein Secondary Tertiary Structure Prediction
2ZIP - Server leucine zipper prediction
http://2zip.molgen.mpg.de/
ANTHEPROT
http://antheprot-pbil.ibcp.fr/
BioCoRE - A Biological Collaborative Research Environment
http://www.ks.uiuc.edu/Research/biocore/
CDART - Conserved Domain Architecture Retrieval Tool
http://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi?cmd=rps
Cn3D - NCBI's 3D structure viewer
http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3dtut.shtml
Dali (EBI)
http://www2.ebi.ac.uk/dali/
ESyPred3D - Predict Protein 3D Structure
http://www.fundp.ac.be/urbm/bioinfo/esypred/
JPRED (Barton Group)
http://www.compbio.dundee.ac.uk/~www-jpred/
Pov-Ray
http://www.povray.org/
Prediction Servers for DNA & Protein Sequences
http://www.cbs.dtu.dk/services/
PSIPRED Protein Structure Prediction Server
http://bioinf.cs.ucl.ac.uk/psipred/
SignalP - Predicts Signal Peptides
http://www.cbs.dtu.dk/services/SignalP/index.php
SMART - Simple Molecular Architecture Research Tool
http://smart.embl-heidelberg.de/
Software to Analyze NPS@ Data
http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=/NPSAHLP/npsahlp_locsoft.html
The PSIPRED Protein Structure Prediction Server
http://bioinf.cs.ucl.ac.uk/psipred/index.html
TMHMM Server - Transmembrane Prediction
http://www.cbs.dtu.dk/services/TMHMM/
UCLA/DOE Fold Server
http://fold.doe-mbi.ucla.edu/
VAST - Retrieve structure alignments froom NCBI
http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml