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| Pathway Analysis |
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| AFCS |
http://www.afcs.org/ |
| ArrayXpath |
http://www.snubi.org/software/ArrayXPath/ |
| Automated Function Prediction |
http://biofunctionprediction.org/ |
| BIND |
http://bond.unleashedinformatics.com/Action? |
| BioCarta - cell signaling |
http://www.biocarta.com/genes/CellSignaling.asp |
| BioInfoBank |
http://cancer.bioinfo.pl/ |
| BioPax |
http://www.biopax.org/ |
| BioPAX Wiki |
http://biopaxwiki.org/cgi-bin/moin.cgi/Biological_software_supporting_BioPAX |
| BOND Web Portal |
http://bond.unleashedinformatics.com/ |
| Brite |
http://www.genome.jp/kegg/brite.html |
| BW Main - Pathways |
http://homepage.univie.ac.at/herbert.mayer/MainPATH.html |
| Cell Circuits |
http://www.cellcircuits.org/ |
| cell signaling |
http://www.cellsignal.com/index.jsp |
| CellDesigner |
http://www.systems-biology.org/cd/ |
| CellML |
http://www.cellml.org/models |
| cellular system modelling |
http://jjj.biochem.sun.ac.za/ |
| cPath |
http://cbio.mskcc.org/cpath/ |
| DDIB |
http://www.ddib.org/DIDWeb/index.html |
| DOQCS |
http://doqcs.ncbs.res.in/ |
| DragonFamilies |
http://pevsnerlab.kennedykrieger.org/dragonpaths.htm |
| EndoNet |
http://endonet.sybig.de/ |
| Explain |
http://www.biobase-international.com/pages/index.php?id=286 |
| GenMapp |
http://www.genmapp.org/ |
| GON |
http://genome.ib.sci.yamaguchi-u.ac.jp/~gon/index.html |
| gpDB |
http://biophysics.biol.uoa.gr/gpDB/index.jsp |
| HPID |
http://wilab.inha.ac.kr/hpid/ |
| HPRD |
http://www.hprd.org/query |
| INOH |
http://www.inoh.org/ |
| intact |
http://www.ebi.ac.uk/intact/site/index.jsf |
| interactome |
http://interactome.org/index.php/Main_Page |
| InterViewer |
http://interviewer.inha.ac.kr/ |
| IPA |
http://www.ingenuity.com/ |
| KEGG BRITE Database |
http://www.genome.jp/kegg/brite.html |
| KEGG PATHWAY Database |
http://www.genome.jp/kegg/pathway.html |
| KEGG PATHWAY genes |
http://www.genome.jp/dbget-bin/www_bget?pathway+hsa04350 |
| MIM NCI |
http://discover.nci.nih.gov/mim/ |
| NetPath |
http://www.netpath.org/ |
| NetPro |
http://www.molecularconnections.com/products.html |
| NetSlim |
http://www.netpath.org/netslim/IL_1_pathway.html |
| oncomine |
http://www.oncomine.org/main/index.jsp |
| Panther |
http://www.pantherdb.org/ |
| PANTHER - Pathways |
http://www.pantherdb.org/pathway/ |
| PANTHER - Prowler |
http://www.pantherdb.org/panther/prowler.jsp |
| PathBLAST |
http://www.pathblast.org/ |
| Pathguide |
http://www.pathguide.org/ |
| PathJam - Biological Pathway Integration Tool |
http://www.pathjam.org/ |
| PathVisio - WikiPathways |
http://www.pathvisio.org/ |
| pathway analysis |
http://folk.uio.no/junbaiw/mgraph/mgraph.html |
| pathway analysis |
http://genmapp.org/ |
| Pathway Commons |
http://www.pathwaycommons.org/pc/ |
| Pathway Tools - GMOD |
http://gmod.org/wiki/Pathway_Tools |
| Pathway Tools Information Site |
http://bioinformatics.ai.sri.com/ptools/ |
| PIANA |
http://sbi.imim.es/piana/ |
| PIM |
http://proteome.wayne.edu/PIMproject1.html |
| poogle |
http://mips.gsf.de/proj/ppi/poogle.html |
| PPID |
http://www.anc.ed.ac.uk/mscs/PPID/ |
| pstiing |
http://pstiing.licr.org/ |
| qpath |
http://www.cs.tau.ac.il/~roded/qpath.pdf |
| Reactome |
http://www.reactome.org/ |
| SPIKE |
http://www.cs.tau.ac.il/~spike/ |
| string |
http://string.embl.de/ |
| swoop - Google Code |
http://code.google.com/p/swoop/ |
| TRANSPATH |
http://www.gene-regulation.com/pub/databases/transpath/6.0/doc/search/TFP_search.html |
| WebGestalt |
http://www.webgestalt.org |