Functional Genomics
Active Site Prediction
http://bioinformatics.cm-uj.krakow.pl/activesite/
bioprofiling.de
http://www.bioprofiling.de/gene_list
firestar
http://firedb.bioinfo.cnio.es/Php/FireStar.php
funcassociate
http://llama.med.harvard.edu/cgi/func/funcassociate
FuncAssociate 2.0 The Gene Set Functionator
http://llama.mshri.on.ca/funcassociate_client/html/
funcbase
http://func.med.harvard.edu/human/genes/list_functional_scores/entrez_gene:1390
funcbase
http://func.mshri.on.ca/
Funtional Gene Network of Mouse Retina
http://bioinfo.wilmer.jhu.edu/morenet/
genehub-gepis
http://www.cgl.ucsf.edu/Research/genentech/genehub-gepis/genehub-gepis-batchsearch.html
geneindexer
http://www.computablegenomix.com/products.php
GeneMANIA
http://www.genemania.org/
genevalorization
http://bioguide-project.net/gv/
GENEVESTIGATOR
https://www.genevestigator.com/gv/
gprofiler
http://biit.cs.ut.ee/gprofiler/
GTOP database
http://spock.genes.nig.ac.jp/~genome/
gxa
http://www.ebi.ac.uk/gxa/
NextBio
http://www.nextbio.com/b/nextbioCorp.nb
NextBio Data Correlations
http://www.nextbio.com/b/search/disc/NGFIC?type=feature&openCategory=16582
NIA Mouse Gene Index
http://lgsun.grc.nia.nih.gov/geneindex/
PANTHER - Prowler
http://www.pantherdb.org/panther/prowler.jsp?checkJavaVersion=0
ProfCom - Profiling of complex functionality
http://webclu.bio.wzw.tum.de/profcom/index.php
ProFunc - Protein function from structure
http://www.ebi.ac.uk/thornton-srv/databases/ProFunc/
SANGAM
http://dblab.usc.edu/sangam/
TAIR - Gene Expression - Expression Profiles
http://www.arabidopsis.org/portals/expression/microarray/microarrayExpressionV2.jsp
ToppCluster
http://toppcluster.cchmc.org/
ToppGene
http://toppgene.cchmc.org/
TRANSPATH Public
http://www.gene-regulation.com/cgi-bin/pub/databases/transpath/search.cgi