Bioconductor
Bioconduct manualManual
http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual
Bioconductor - BiocViews
http://bioconductor.org/help/bioc-views/2.7/BiocViews.html
Bioconductor - Install
http://www.bioconductor.org/install/
Bioconductor 2.4 Software Packages
http://bioconductor.org/packages/release/bioc/
bioconductor.org
http://www.bioconductor.org/
Limma tutorial
http://bio.lundberg.gu.se/courses/vt04/ma.html
limmaGUI
http://bioinf.wehi.edu.au/limmaGUI/
makecdfenv
http://www.bioconductor.org/packages/2.3/bioc/html/makecdfenv.html
Rank Products Analysis
http://strep-microarray.sbs.surrey.ac.uk/RankProducts/
R-Cloud Workbench
http://www.ebi.ac.uk/Tools/rcloud/